{"id":10680,"date":"2023-05-15T14:37:43","date_gmt":"2023-05-15T18:37:43","guid":{"rendered":"https:\/\/blogs.nejm.org\/hiv-id-observations\/?p=10680"},"modified":"2024-01-04T12:48:51","modified_gmt":"2024-01-04T17:48:51","slug":"types-of-hiv-papers-a-quick-guide","status":"publish","type":"post","link":"https:\/\/blogs.nejm.org\/hiv-id-observations\/index.php\/types-of-hiv-papers-a-quick-guide\/2023\/05\/15\/","title":{"rendered":"Types of HIV Papers &#8212; A Quick Guide"},"content":{"rendered":"<p>I spend a lot of my time reading HIV clinical research papers. <em>A lot. <\/em><\/p>\n<p>So here, for your viewing pleasure, is a poster I updated and modified from a brilliant <a href=\"https:\/\/xkcd.com\/2456\/\" target=\"_blank\" rel=\"noopener\">xkcd web comic<\/a> (using <a href=\"https:\/\/observablehq.com\/@guillaume-levrier\/xkcd-types-paper\" target=\"_blank\" rel=\"noopener\">this tool<\/a>), describing some common HIV clinical research themes.<\/p>\n<p>Suitable for framing, it should prove helpful as you embark on your next research project.<\/p>\n<p><img loading=\"lazy\" decoding=\"async\" class=\"aligncenter wp-image-10682\" src=\"https:\/\/blogs.nejm.org\/hiv-id-observations\/wp-content\/uploads\/sites\/2\/2023\/05\/types-of-hiv-papers-2023.png\" alt=\"\" width=\"686\" height=\"1172\" srcset=\"https:\/\/blogs.nejm.org\/hiv-id-observations\/wp-content\/uploads\/sites\/2\/2023\/05\/types-of-hiv-papers-2023.png 928w, https:\/\/blogs.nejm.org\/hiv-id-observations\/wp-content\/uploads\/sites\/2\/2023\/05\/types-of-hiv-papers-2023-176x300.png 176w, https:\/\/blogs.nejm.org\/hiv-id-observations\/wp-content\/uploads\/sites\/2\/2023\/05\/types-of-hiv-papers-2023-600x1024.png 600w, https:\/\/blogs.nejm.org\/hiv-id-observations\/wp-content\/uploads\/sites\/2\/2023\/05\/types-of-hiv-papers-2023-768x1312.png 768w, https:\/\/blogs.nejm.org\/hiv-id-observations\/wp-content\/uploads\/sites\/2\/2023\/05\/types-of-hiv-papers-2023-899x1536.png 899w\" sizes=\"auto, (max-width: 686px) 100vw, 686px\" \/><\/p>\n<p>A brief commentary on the contents of these papers:<\/p>\n<ol>\n<li><em><strong>Switching suppressed people with HIV (PWH) on antiretroviral therapy (ART) to almost anything maintains viral suppression.<\/strong>\u00a0<\/em>This is true for both biologic and behavioral reasons: there&#8217;s no viral replication at baseline, and only people with proven good medication adherence are eligible to participate. That means if it doesn&#8217;t work &#8212; like the <strong><a href=\"https:\/\/academic.oup.com\/jac\/article\/69\/6\/1648\/830060\" target=\"_blank\" rel=\"noopener\">raltegravir plus maraviroc switch<\/a><\/strong> &#8212; it&#8217;s pretty bad.<\/li>\n<li><strong><em>Older people with HIV have more comorbid medical problems &#8212; yes, aging sucks for everyone.<\/em><\/strong> Everyone! No exceptions to the rule, alas.<\/li>\n<li><strong><em>Here are a bunch of abnormal cytokines that nobody measures in clinical practice.<\/em><\/strong> They&#8217;re abnormal, yes. Clinical significance? Ummm &#8230; let me get back to you on that one. Or let me ask <strong><a href=\"https:\/\/twitter.com\/SeretIDirini\/status\/1657128226135867398?s=20\" target=\"_blank\" rel=\"noopener\">someone who loves cytokines<\/a><\/strong>, like the innovative and wonderful Dr. Irini Sereti.<\/li>\n<li><strong><em>Low-level viremia drives us crazy, so we studied it &#8212; but you still won&#8217;t know what to do.<\/em><\/strong>\u00a0 I&#8217;m lucky to work with a guru of low-level viremia (among other things), Dr. Jonathan Li, a translational virologist and senior author on <strong><a href=\"https:\/\/www.nature.com\/articles\/s41591-023-02611-1\" target=\"_blank\" rel=\"noopener\">this fascinating study<\/a><\/strong>. He knows more about this annoying lab result &#8212; its causes and implications &#8212; than anyone on the planet. Good to have his number on speed dial, if &#8220;speed dial&#8221; is still a thing in a post-landline age.<\/li>\n<li><em><strong>Another unsuccessful broadly neutralizing antibody (bnAb) study, but this won&#8217;t keep us from trying again with something else.<\/strong> <\/em>Let&#8217;s try an even broader one! One that&#8217;s more potent! Let&#8217;s &#8220;extendify&#8221; it, using techniques of &#8220;extendification&#8221;, so it can be given less often! Then it might work. But if not, we&#8217;ll try again!<\/li>\n<li><em><strong>Some phylogenetic trees and\/or single-nucleotide polymorphisms (SNPs) that you won&#8217;t understand.<\/strong> <\/em>Or at least, <em>I<\/em> won&#8217;t understand. Throw in a genomewide association study (<strong><a href=\"https:\/\/medlineplus.gov\/genetics\/understanding\/genomicresearch\/gwastudies\/\" target=\"_blank\" rel=\"noopener\">GWAS)<\/a> <\/strong>with a <strong><a href=\"https:\/\/www.researchgate.net\/figure\/Manhattan-plot-of-multi-trait-GWAS-results-The-more-significant-the-association-the_fig3_351300757\" target=\"_blank\" rel=\"noopener\">Manhattan plot<\/a>,<\/strong> and let the confusion start.<\/li>\n<li><em><strong>Poor adherence to preexposure prophylaxis (PrEP) is associated with getting HIV (I know, shocker).<\/strong><\/em> These are important studies from a behavioral health perspective, such as <strong><a href=\"https:\/\/academic.oup.com\/cid\/advance-article\/doi\/10.1093\/cid\/ciad221\/7117495\" target=\"_blank\" rel=\"noopener\">this recent one.<\/a><\/strong> But let me put this a different way &#8212; what if you had a strategy that clearly worked, but it wasn&#8217;t used? Would it still work?<\/li>\n<li><em><strong>D&#8217;oh! Some people with HIV were diagnosed late because the clinicians caring for them for years never sent an HIV test.<\/strong><\/em> A remarkably common clinical error, even in 2023, sadly. Quoting <strong><a href=\"https:\/\/simpsonswiki.com\/wiki\/D%27oh\" target=\"_blank\" rel=\"noopener\">this noted researcher<\/a><\/strong> in the title&#8217;s first syllable.<\/li>\n<li><strong>This HIV cure intervention using drugs you&#8217;ve never heard of looks really promising &#8212; in a mouse.<\/strong> Or if not panobinostat, vedolizumab, or ipilimumab, how about <a href=\"https:\/\/doi.org\/10.1073\/pnas.2217887120\"><strong>some CRISPR?<\/strong><\/a><\/li>\n<li><em><strong>The incidence curves in this randomized trial of an HIV vaccine versus placebo overlap with depressing precision.<\/strong><\/em> Here&#8217;s <strong><a href=\"https:\/\/www.natap.org\/2023\/CROI\/croi_124.htm\" target=\"_blank\" rel=\"noopener\">the latest<\/a><\/strong>, alas. Oh well, it&#8217;s important to keep trying.<\/li>\n<li><em><strong>No, we still haven&#8217;t found a good use for maraviroc. <\/strong><\/em>But still <a href=\"https:\/\/doi.org\/10.1093\/cid\/ciad265\" target=\"_blank\" rel=\"noopener\"><strong>trying!<\/strong><\/a> Trivia buffs will know the clever brand name of this rarely used antiretroviral agent &#8212; <em>Selzentry.<\/em> Get it?<\/li>\n<li><em><strong>Here&#8217;s a resistance mutation that only older HIV doctors have memorized.<\/strong><\/em> Guilty as charged. I&#8217;m still miffed that E138K is a resistance mutation for both nonnucleoside reverse-transcriptase inhibitors (<strong><a href=\"https:\/\/hivdb.stanford.edu\/dr-summary\/resistance-notes\/NNRTI\/\">NNRTIs)<\/a><\/strong> and <a href=\"https:\/\/hivdb.stanford.edu\/dr-summary\/resistance-notes\/INSTI\/\"><strong>integrase inhibitors<\/strong>.<\/a> What&#8217;s up with that?<\/li>\n<\/ol>\n<p>Ok, that&#8217;s a wrap. Am sure I left off some major themes, what else would you include?<\/p>\n<p>Hey, dog lovers &#8212; is this you? (It&#8217;s definitely me.)<\/p>\n<blockquote class=\"twitter-tweet\" data-width=\"500\" data-dnt=\"true\">\n<p lang=\"en\" dir=\"ltr\">Greeting humans vs their dogs <a href=\"https:\/\/t.co\/NeGbEtd1n8\">pic.twitter.com\/NeGbEtd1n8<\/a><\/p>\n<p>&mdash; Emma Pope (@emmerpope) <a href=\"https:\/\/twitter.com\/emmerpope\/status\/1572676980944023552?ref_src=twsrc%5Etfw\">September 21, 2022<\/a><\/p><\/blockquote>\n<p><script async src=\"https:\/\/platform.twitter.com\/widgets.js\" charset=\"utf-8\"><\/script><\/p>\n","protected":false},"excerpt":{"rendered":"<p>I spend a lot of my time reading HIV clinical research papers. A lot. So here, for your viewing pleasure, is a poster I updated and modified from a brilliant xkcd web comic (using this tool), describing some common HIV clinical research themes. Suitable for framing, it should prove helpful as you embark on your [&hellip;]<\/p>\n","protected":false},"author":6,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[3,4,10],"tags":[],"class_list":["post-10680","post","type-post","status-publish","format-standard","hentry","category-health-care","category-hiv","category-research"],"post_mailing_queue_ids":[],"_links":{"self":[{"href":"https:\/\/blogs.nejm.org\/hiv-id-observations\/index.php\/wp-json\/wp\/v2\/posts\/10680","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/blogs.nejm.org\/hiv-id-observations\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/blogs.nejm.org\/hiv-id-observations\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/blogs.nejm.org\/hiv-id-observations\/index.php\/wp-json\/wp\/v2\/users\/6"}],"replies":[{"embeddable":true,"href":"https:\/\/blogs.nejm.org\/hiv-id-observations\/index.php\/wp-json\/wp\/v2\/comments?post=10680"}],"version-history":[{"count":0,"href":"https:\/\/blogs.nejm.org\/hiv-id-observations\/index.php\/wp-json\/wp\/v2\/posts\/10680\/revisions"}],"wp:attachment":[{"href":"https:\/\/blogs.nejm.org\/hiv-id-observations\/index.php\/wp-json\/wp\/v2\/media?parent=10680"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/blogs.nejm.org\/hiv-id-observations\/index.php\/wp-json\/wp\/v2\/categories?post=10680"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/blogs.nejm.org\/hiv-id-observations\/index.php\/wp-json\/wp\/v2\/tags?post=10680"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}